Eqmr-fcrth

From Eqtnminer

Jump to: navigation, search

Contents

Introduction

eqmr-fcrth

Options

Short Long Description
-d --data The database (.db file)
-f --feature The feature database (.fdb file)
-o --output The output result database
-m --model The model for computing the Bayes Factors
-w --window The cis-candidate window size in bp (default 500000)
-p --permut The number of permutations to do (default is none)
-t --feature-table A table of features to look at
-c --chrom The name(s) of the chromosome(s) to focus on
-n --thread Number of threads to use
--qnorm Quantile normalize the expression level
--pval For permutations, do permutation for p-values (otherwise bf)
--best For permutations, report only the best SNP per gene (min p-val or max bf)

Examples

See Also

warning.png"{{{mainsourcefile}}}" cannot be used as a page name in this wiki.

Facts about Eqmr-fcrthRDF feed
Main source filewarning.png"{{{mainsourcefile}}}" cannot be used as a page name in this wiki.
Program categoryData Analysis  +
Program languageC  +
Program nameeqmr-fcrth  +
Program titlePerform cis-regression (multi-thread)
Personal tools
Namespaces
Variants
Actions
Menu
Toolbox