The first step consists in gathering all the input data in a comprehensive manner via the Eqmr-db program. But caution, each type of data must be formatted in a particular way (Category:File Format). It is possible to query the resulting databank with the Eqmr-dbget program.
Once this is done, the Eqmr-fdb program allows to summarize the phenotype data into a feature databank, for instance at the gene level if the initial data were given at the probe level. The results can be exported using the Eqmr-fexp program.